Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTF3C2General transcription factor IIIC subunit 2. (904 aa)    
Predicted Functional Partners:
GTF3C4
General transcription factor IIIC subunit 4.
    
 0.999
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.999
GTF3C6
General transcription factor IIIC subunit 6.
    
 0.993
POLR3A
RNA polymerase III subunit A.
   
 0.801
RPL3
Ribosomal protein L3.
    
   0.782
FBXW7
F-box and WD repeat domain containing 7.
    
   0.774
SMARCAD1
annotation not available
    
   0.774
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.757
ENSVPAP00000011246
annotation not available
    
 
 0.751
POLR2H
RNA polymerase II subunit H.
    
 0.743
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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