Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4Bpre-mRNA processing factor 4B. (931 aa)    
Predicted Functional Partners:
PNN
Pinin, desmosome associated protein.
   
 0.995
RBM25
RNA binding motif protein 25.
   
  0.968
PRPF4
pre-mRNA processing factor 4.
    
 
 0.960
ENSVPAP00000005625
annotation not available
    
 
 0.958
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.955
TCERG1
Transcription elongation regulator 1.
   
 0.931
USP39
Ubiquitin specific peptidase 39.
    
   0.906
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
   
 0.896
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.892
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 
 0.885
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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