Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAHPhenylalanine hydroxylase. (452 aa)    
Predicted Functional Partners:
PCBD1
Pterin-4 alpha-carbinolamine dehydratase 1.
  
 0.994
SPR
Sepiapterin reductase.
    
 0.994
QDPR
Quinoid dihydropteridine reductase.
   
 0.979
TAT
Tyrosine aminotransferase.
   
 
 0.974
GOT2
Glutamic-oxaloacetic transaminase 2.
  
 
 0.942
GOT1
Glutamic-oxaloacetic transaminase 1.
  
 
 0.935
TPH1
Tryptophan hydroxylase 1.
  
  
 
0.902
HGD
Homogentisate 1,2-dioxygenase.
  
  
 0.897
TYR
Tyrosinase.
   
 
 0.853
USP19
Ubiquitin specific peptidase 19.
    
   0.774
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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