Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000001946annotation not available (744 aa)    
Predicted Functional Partners:
CRY1
Cryptochrome circadian regulator 1.
    
 0.953
CRY2
Cryptochrome circadian regulator 2.
    
 0.952
ENSVPAP00000005500
annotation not available
   
 0.947
CIPC
CLOCK interacting pacemaker.
    
 0.919
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.917
SIRT1
Sirtuin 1.
    
 0.862
RORB
RAR related orphan receptor B.
    
 0.762
NR1D2
Nuclear receptor subfamily 1 group D member 2.
    
 0.762
ENSVPAP00000010495
annotation not available
    
 0.760
RORA
RAR related orphan receptor A.
    
 0.752
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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