Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MTPAPMitochondrial poly(A) polymerase. (529 aa)    
Predicted Functional Partners:
CALCOCO2
Calcium binding and coiled-coil domain 2.
    
   0.964
PAPOLG
poly(A) polymerase gamma.
   
 
 0.850
PAPOLA
poly(A) polymerase alpha.
   
 
 0.775
HECTD1
HECT domain E3 ubiquitin protein ligase 1.
    
   0.774
DYNLL2
Dynein light chain LC8-type 2.
    
   0.732
SLIRP
SRA stem-loop interacting RNA binding protein.
    
 0.658
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.646
ENSVPAP00000000545
annotation not available
    
 
 0.627
PNPT1
Polyribonucleotide nucleotidyltransferase 1.
   
  
 0.611
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.608
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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