LOC107035023 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC107035023

Histone H2A type 1-like. (130 aa)

Predicted Functional Partners:

MYSM1

0.843

HDAC2

0.832

ENSVPAP00000010202

0.832

RPS27A

0.749

LOC102528314

0.734

LOC102528314-2

0.734

LOC102528314-3

0.734

ENSVPAP00000008646

0.734

LOC102528314-4

0.734

LOC102528314-5

0.734

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVPAP00000008646	ENSVPAP00000010202	ENSVPAP00000008646	ENSVPAP00000010202	annotation not available	annotation not available	0.712
ENSVPAP00000008646	HDAC2	ENSVPAP00000008646	ENSVPAP00000001394	annotation not available	Histone deacetylase 2.	0.716
ENSVPAP00000008646	LOC102528314	ENSVPAP00000008646	ENSVPAP00000003981	annotation not available	Histone H4.	0.801
ENSVPAP00000008646	LOC102528314-2	ENSVPAP00000008646	ENSVPAP00000003982	annotation not available	Histone H4.	0.801
ENSVPAP00000008646	LOC102528314-3	ENSVPAP00000008646	ENSVPAP00000007652	annotation not available	Histone H4.	0.801
ENSVPAP00000008646	LOC102528314-4	ENSVPAP00000008646	ENSVPAP00000011664	annotation not available	Histone H4.	0.801
ENSVPAP00000008646	LOC102528314-5	ENSVPAP00000008646	ENSVPAP00000011721	annotation not available	Histone H4.	0.801
ENSVPAP00000008646	LOC107035023	ENSVPAP00000008646	ENSVPAP00000002005	annotation not available	Histone H2A type 1-like.	0.734
ENSVPAP00000008646	MYSM1	ENSVPAP00000008646	ENSVPAP00000006730	annotation not available	Myb like, SWIRM and MPN domains 1.	0.760
ENSVPAP00000008646	RPS27A	ENSVPAP00000008646	ENSVPAP00000006598	annotation not available	Ribosomal protein S27a.	0.810
ENSVPAP00000010202	ENSVPAP00000008646	ENSVPAP00000010202	ENSVPAP00000008646	annotation not available	annotation not available	0.712
ENSVPAP00000010202	HDAC2	ENSVPAP00000010202	ENSVPAP00000001394	annotation not available	Histone deacetylase 2.	0.905
ENSVPAP00000010202	LOC102528314	ENSVPAP00000010202	ENSVPAP00000003981	annotation not available	Histone H4.	0.712
ENSVPAP00000010202	LOC102528314-2	ENSVPAP00000010202	ENSVPAP00000003982	annotation not available	Histone H4.	0.712
ENSVPAP00000010202	LOC102528314-3	ENSVPAP00000010202	ENSVPAP00000007652	annotation not available	Histone H4.	0.712
ENSVPAP00000010202	LOC102528314-4	ENSVPAP00000010202	ENSVPAP00000011664	annotation not available	Histone H4.	0.712
ENSVPAP00000010202	LOC102528314-5	ENSVPAP00000010202	ENSVPAP00000011721	annotation not available	Histone H4.	0.712
ENSVPAP00000010202	LOC107035023	ENSVPAP00000010202	ENSVPAP00000002005	annotation not available	Histone H2A type 1-like.	0.832
ENSVPAP00000010202	MYSM1	ENSVPAP00000010202	ENSVPAP00000006730	annotation not available	Myb like, SWIRM and MPN domains 1.	0.558
ENSVPAP00000010202	RPS27A	ENSVPAP00000010202	ENSVPAP00000006598	annotation not available	Ribosomal protein S27a.	0.470