Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000002027annotation not available (1389 aa)    
Predicted Functional Partners:
CASP9
Caspase 9.
    
 0.720
TMEM54
Transmembrane protein 54.
    
 0.654
APAF1
Apoptotic peptidase activating factor 1.
    
 0.648
USP48
Ubiquitin specific peptidase 48.
    
   0.636
BNIPL
BCL2 interacting protein like.
      
 0.585
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
      
 0.577
VCP
Valosin containing protein.
    
  0.561
POLR3B
RNA polymerase III subunit B.
  
 
 0.559
ENSVPAP00000000288
annotation not available
   
  0.553
RHOJ
Ras homolog family member J.
   
  0.553
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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