Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GOPCGolgi associated PDZ and coiled-coil motif containing. (463 aa)    
Predicted Functional Partners:
CFTR
CF transmembrane conductance regulator.
    
 0.995
ENSVPAP00000000288
annotation not available
    
 0.962
RHOJ
Ras homolog family member J.
    
 0.820
TTC26
Tetratricopeptide repeat domain 26.
    
 0.794
ENSVPAP00000009552
annotation not available
    
 0.734
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.700
CCDC62
Coiled-coil domain containing 62.
      
 0.684
RAB3B
RAB3B, member RAS oncogene family.
    
 0.672
SPATA16
Spermatogenesis associated 16.
      
 0.671
PRKCI
Protein kinase C iota.
    
 0.656
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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