Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VTI1AVesicle transport through interaction with t-SNAREs 1A. (217 aa)    
Predicted Functional Partners:
STX6
Syntaxin 6.
   
 0.999
VAMP4
Vesicle associated membrane protein 4.
   
 0.999
VAMP3
Vesicle associated membrane protein 3.
   
 0.998
STX8
Syntaxin 8.
   
 0.998
STX7
Syntaxin 7.
   
 0.997
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
0.996
STX12
Syntaxin 12.
   
 0.994
STX5
Syntaxin 5.
    
 0.993
YKT6
YKT6 v-SNARE homolog.
    
 
 0.987
VPS45
Vacuolar protein sorting 45 homolog.
   
 
 0.986
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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