Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM120CFamily with sequence similarity 120C. (862 aa)    
Predicted Functional Partners:
HNRNPC
Heterogeneous nuclear ribonucleoprotein C.
    
 
 0.838
WNK3
WNK lysine deficient protein kinase 3.
 
 
  
 0.715
PHF8
PHD finger protein 8.
   
  
 0.691
ENSVPAP00000010491
annotation not available
    
   0.666
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
    
   0.612
RBM45
RNA binding motif protein 45.
    
   0.587
ERAL1
Era like 12S mitochondrial rRNA chaperone 1.
   
 
 0.572
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
    
   0.557
ENSVPAP00000005949
annotation not available
    
   0.557
STAU1
Staufen double-stranded RNA binding protein 1.
    
 
 0.553
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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