Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP40Ubiquitin specific peptidase 40. (1098 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.952
GMPS
Guanine monophosphate synthase.
   
 
 0.943
DAXX
Death domain associated protein.
    
 0.940
RPS27A
Ribosomal protein S27a.
   
 0.925
ENSVPAP00000005903
annotation not available
   
 0.918
ENSVPAP00000002548
annotation not available
    
 
 0.906
TRAF6
TNF receptor associated factor 6.
    
 0.896
ENSVPAP00000005678
annotation not available
   
 
 0.881
MYC
MYC proto-oncogene, bHLH transcription factor.
    
 0.861
CHEK1
Checkpoint kinase 1.
    
 
 0.853
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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