Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL4A4Collagen type IV alpha 4 chain. (1682 aa)    
Predicted Functional Partners:
ITGA1
Integrin subunit alpha 1.
    
 0.968
ITGAV
Integrin subunit alpha V.
    
 0.960
ITGA2
Integrin subunit alpha 2.
    
 0.958
ENSVPAP00000002137
annotation not available
  
 
 
0.956
ENSVPAP00000008949
annotation not available
  
 
 
0.955
ITGB1
Integrin subunit beta 1.
    
 0.947
COL4A6
Collagen type IV alpha 6 chain.
  
  
 
0.940
LAMA2
Laminin subunit alpha 2.
    
 0.919
LAMA4
Laminin subunit alpha 4.
    
 0.919
FN1
Fibronectin 1.
    
 0.913
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.