Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TM4SF20Transmembrane 4 L six family member 20. (157 aa)    
Predicted Functional Partners:
TM4SF4
Transmembrane 4 L six family member 4.
   
  
 0.864
PLLP
Plasmolipin.
      
 0.720
ENSVPAP00000000071
annotation not available
      
 0.691
CERS6
Ceramide synthase 6.
      
 0.689
TM4SF5
Transmembrane 4 L six family member 5.
   
  
 0.542
TM4SF18
Transmembrane 4 L six family member 18.
      
 0.535
ENSVPAP00000007001
annotation not available
      
 0.525
DEFB129
Defensin beta 129.
      
 0.524
B3GALT2
Beta-1,3-galactosyltransferase 2.
      
 0.524
CERS5
Ceramide synthase 5.
      
 0.514
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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