Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNAPC1Small nuclear RNA activating complex polypeptide 1. (370 aa)    
Predicted Functional Partners:
SNAPC3
Small nuclear RNA activating complex polypeptide 3.
    
 0.999
SNAPC5
Small nuclear RNA activating complex polypeptide 5.
    
 0.999
POU2F1
POU class 2 homeobox 1.
    
 0.974
GTF2B
General transcription factor IIB.
    
 0.967
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.958
GTF2F2
General transcription factor IIF subunit 2.
    
  0.946
GTF2A2
General transcription factor IIA subunit 2.
    
  0.937
GTF2A1
General transcription factor IIA subunit 1.
    
  0.930
POLR2K
RNA polymerase II subunit K.
    
  0.925
ENSVPAP00000009847
annotation not available
    
 0.922
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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