STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCD5stearoyl-CoA desaturase 5. (250 aa)    
Predicted Functional Partners:
HSD17B12
Hydroxysteroid 17-beta dehydrogenase 12.
   
 0.940
HACD2
3-hydroxyacyl-CoA dehydratase 2.
     
 0.918
HACD3
3-hydroxyacyl-CoA dehydratase 3.
     
 0.904
HACD4
3-hydroxyacyl-CoA dehydratase 4.
     
 0.904
SCD
stearoyl-CoA desaturase.
  
  
 
0.901
ENSVPAP00000001180
annotation not available
    
 0.742
GPAT3
Glycerol-3-phosphate acyltransferase 3.
   
 0.705
PSMB4
Proteasome 20S subunit beta 4.
      
 0.672
EBF1
EBF transcription factor 1.
   
 
 0.668
EBF2
EBF transcription factor 2.
   
 
 0.668
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.