Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GBX1Gastrulation brain homeobox 1. (184 aa)    
Predicted Functional Partners:
PBX1
PBX homeobox 1.
    
 0.655
PBX3
PBX homeobox 3.
    
 0.655
ENSVPAP00000001520
annotation not available
    
 0.568
IRX6
Iroquois homeobox 6.
    
 0.471
LMX1A
LIM homeobox transcription factor 1 alpha.
   
 0.462
ENSVPAP00000000933
annotation not available
    
 0.447
ENSVPAP00000001763
annotation not available
    
 0.447
TGIF2
TGFB induced factor homeobox 2.
    
 0.447
MEIS2
Meis homeobox 2.
    
 0.447
MKX
Mohawk homeobox.
    
 0.447
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.