Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZMAT2Zinc finger matrin-type 2. (196 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
   
 0.991
WBP4
WW domain binding protein 4.
   
 0.986
TXNL4A
Thioredoxin like 4A.
   
 0.986
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
    
 0.981
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.972
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.968
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.968
TXNL4B
Thioredoxin like 4B.
   
 0.966
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.966
CDC40
Cell division cycle 40.
   
 0.964
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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