Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RAB3BRAB3B, member RAS oncogene family. (115 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.986
SLC18A3
Solute carrier family 18 member A3.
     
 0.972
CHM
CHM Rab escort protein.
    
 0.967
SYT1
Synaptotagmin 1.
   
 0.964
RPH3A
Rabphilin 3A.
   
 
 0.952
ENSVPAP00000009053
annotation not available
   
 
 0.951
DNAJC5B
DnaJ heat shock protein family (Hsp40) member C5 beta.
     
 0.941
RABIF
RAB interacting factor.
    
 
 0.940
SYT4
Synaptotagmin 4.
   
 0.880
RIMS3
Regulating synaptic membrane exocytosis 3.
   
 0.874
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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