Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RHOT1Ras homolog family member T1. (677 aa)    
Predicted Functional Partners:
TOMM70
Translocase of outer mitochondrial membrane 70.
   
 0.986
MUL1
Mitochondrial E3 ubiquitin protein ligase 1.
     
 0.944
MARCHF5
Membrane associated ring-CH-type finger 5.
    
 0.923
CALCOCO2
Calcium binding and coiled-coil domain 2.
    
 0.919
ENSVPAP00000007215
annotation not available
    
 0.916
OPTN
Optineurin.
    
 0.915
TRAK2
Trafficking kinesin protein 2.
    
 0.913
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
  0.912
AMFR
Autocrine motility factor receptor.
    
  0.911
USP15
Ubiquitin specific peptidase 15.
    
 0.905
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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