Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000002407annotation not available (601 aa)    
Predicted Functional Partners:
LIN54
Lin-54 DREAM MuvB core complex component.
    
 0.993
LIN9
Lin-9 DREAM MuvB core complex component.
    
 0.993
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.987
RBL1
RB transcriptional corepressor like 1.
    
 0.953
CDK2
Cyclin dependent kinase 2.
   
 
 0.953
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.936
ENSVPAP00000011053
annotation not available
   
 0.936
ENSVPAP00000010039
annotation not available
    
 0.935
RBL2
RB transcriptional corepressor like 2.
    
 0.897
E2F1
E2F transcription factor 1.
   
 0.883
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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