Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RFKRiboflavin kinase. (127 aa)    
Predicted Functional Partners:
FLAD1
Flavin adenine dinucleotide synthetase 1.
   
 0.995
ENSVPAP00000008801
annotation not available
    
 0.905
ENPP3
Ectonucleotide pyrophosphatase/phosphodiesterase 3.
    
  0.901
ENPP1
Ectonucleotide pyrophosphatase/phosphodiesterase 1.
    
  0.901
IYD
Iodotyrosine deiodinase.
    
 0.886
ENSVPAP00000000629
annotation not available
  
 
 0.855
FDX1
Ferredoxin 1.
     
 0.765
YKT6
YKT6 v-SNARE homolog.
    
   0.759
METAP1D
Methionyl aminopeptidase type 1D, mitochondrial.
    
  0.742
ENSVPAP00000002557
annotation not available
  
 
 0.728
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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