Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC198Coiled-coil domain containing 198. (295 aa)    
Predicted Functional Partners:
SLC35F4
Solute carrier family 35 member F4.
      
 0.669
FHL5
Four and a half LIM domains 5.
    
   0.635
ENSVPAP00000011449
annotation not available
    
   0.630
OR8B12
Olfactory receptor 8B12.
      
 0.571
OR8B8
Olfactory receptor family 8 subfamily B member 8.
      
 0.571
SEC24A
SEC24 homolog A, COPII coat complex component.
      
 0.522
ENSVPAP00000001469
annotation not available
      
 0.431
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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