Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GATMGlycine amidinotransferase. (363 aa)    
Predicted Functional Partners:
AGXT2
Alanine--glyoxylate aminotransferase 2.
   
 0.955
ARG2
Arginase 2.
    
 0.929
AGMAT
Agmatinase.
    
 0.928
ARG1
Arginase 1.
    
 0.914
ENSVPAP00000004254
annotation not available
    
 0.909
DAO
D-amino acid oxidase.
    
  0.900
GAD1
Glutamate decarboxylase 1.
    
 0.827
GAD2
Glutamate decarboxylase 2.
    
 0.827
ENSVPAP00000009513
annotation not available
   
 0.819
RPL38
Ribosomal protein L38.
    
 
 0.738
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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