Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STMN4Stathmin 4. (196 aa)    
Predicted Functional Partners:
STMN1
Stathmin 1.
    
   0.965
TRAPPC1
Trafficking protein particle complex 1.
    
   0.965
TRAPPC6B
Trafficking protein particle complex 6B.
    
   0.951
ENSVPAP00000001202
annotation not available
    
 
 0.941
TRAPPC4
Trafficking protein particle complex 4.
    
   0.912
ENSVPAP00000005651
annotation not available
   
  0.904
TRAPPC3
Trafficking protein particle complex 3.
    
   0.843
TRAPPC3L
Trafficking protein particle complex 3 like.
    
   0.843
ENSVPAP00000001447
annotation not available
   
 0.827
ENSVPAP00000010346
annotation not available
    
 
 0.822
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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