LRGUK protein (Vicugna pacos) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LRGUK

Leucine rich repeats and guanylate kinase domain containing. (821 aa)

Predicted Functional Partners:

ENSVPAP00000000769

0.977

ENSVPAP00000003396

0.953

ENSVPAP00000000768

0.945

ENSVPAP00000000770

0.945

DPY30

0.935

ENSVPAP00000000777

0.911

PPP1CB

0.909

PPP1CC

0.909

SPAG17

0.908

ENSVPAP00000002321

0.901

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DPY30	ENSVPAP00000000768	ENSVPAP00000011627	ENSVPAP00000000768	Dpy-30 histone methyltransferase complex regulatory subunit.	annotation not available	0.492
DPY30	ENSVPAP00000000769	ENSVPAP00000011627	ENSVPAP00000000769	Dpy-30 histone methyltransferase complex regulatory subunit.	annotation not available	0.492
DPY30	ENSVPAP00000000770	ENSVPAP00000011627	ENSVPAP00000000770	Dpy-30 histone methyltransferase complex regulatory subunit.	annotation not available	0.492
DPY30	ENSVPAP00000000777	ENSVPAP00000011627	ENSVPAP00000000777	Dpy-30 histone methyltransferase complex regulatory subunit.	annotation not available	0.429
DPY30	ENSVPAP00000002321	ENSVPAP00000011627	ENSVPAP00000002321	Dpy-30 histone methyltransferase complex regulatory subunit.	annotation not available	0.438
DPY30	LRGUK	ENSVPAP00000011627	ENSVPAP00000002564	Dpy-30 histone methyltransferase complex regulatory subunit.	Leucine rich repeats and guanylate kinase domain containing.	0.935
DPY30	PPP1CB	ENSVPAP00000011627	ENSVPAP00000001506	Dpy-30 histone methyltransferase complex regulatory subunit.	Protein phosphatase 1 catalytic subunit beta.	0.682
DPY30	PPP1CC	ENSVPAP00000011627	ENSVPAP00000007826	Dpy-30 histone methyltransferase complex regulatory subunit.	Protein phosphatase 1 catalytic subunit gamma.	0.682
DPY30	SPAG17	ENSVPAP00000011627	ENSVPAP00000000069	Dpy-30 histone methyltransferase complex regulatory subunit.	Sperm associated antigen 17.	0.910
ENSVPAP00000000768	DPY30	ENSVPAP00000000768	ENSVPAP00000011627	annotation not available	Dpy-30 histone methyltransferase complex regulatory subunit.	0.492
ENSVPAP00000000768	ENSVPAP00000000769	ENSVPAP00000000768	ENSVPAP00000000769	annotation not available	annotation not available	0.997
ENSVPAP00000000768	ENSVPAP00000000770	ENSVPAP00000000768	ENSVPAP00000000770	annotation not available	annotation not available	0.983
ENSVPAP00000000768	ENSVPAP00000002321	ENSVPAP00000000768	ENSVPAP00000002321	annotation not available	annotation not available	0.606
ENSVPAP00000000768	ENSVPAP00000003396	ENSVPAP00000000768	ENSVPAP00000003396	annotation not available	annotation not available	0.806
ENSVPAP00000000768	LRGUK	ENSVPAP00000000768	ENSVPAP00000002564	annotation not available	Leucine rich repeats and guanylate kinase domain containing.	0.945
ENSVPAP00000000769	DPY30	ENSVPAP00000000769	ENSVPAP00000011627	annotation not available	Dpy-30 histone methyltransferase complex regulatory subunit.	0.492
ENSVPAP00000000769	ENSVPAP00000000768	ENSVPAP00000000769	ENSVPAP00000000768	annotation not available	annotation not available	0.997
ENSVPAP00000000769	ENSVPAP00000000770	ENSVPAP00000000769	ENSVPAP00000000770	annotation not available	annotation not available	0.997
ENSVPAP00000000769	ENSVPAP00000002321	ENSVPAP00000000769	ENSVPAP00000002321	annotation not available	annotation not available	0.883
ENSVPAP00000000769	ENSVPAP00000003396	ENSVPAP00000000769	ENSVPAP00000003396	annotation not available	annotation not available	0.833