Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM13AFamily with sequence similarity 13 member A. (1021 aa)    
Predicted Functional Partners:
FAM184B
Family with sequence similarity 184 member B.
      
 0.769
MYPN
Myopalladin.
      
 0.669
FAM43A
Family with sequence similarity 43 member A.
      
 0.659
HHIP
Hedgehog interacting protein.
    
 
 0.655
SIRT1
Sirtuin 1.
      
 0.653
IREB2
Iron responsive element binding protein 2.
    
 
 0.638
ENSVPAP00000000422
annotation not available
      
 0.615
GSTCD
Glutathione S-transferase C-terminal domain containing.
      
 0.614
ENSVPAP00000002568
annotation not available
      
 0.604
ENSVPAP00000006356
annotation not available
      
 0.598
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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