Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB5ARAB5A, member RAS oncogene family. (160 aa)    
Predicted Functional Partners:
ENSVPAP00000005668
annotation not available
   
 0.998
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.995
RBSN
Rabenosyn, RAB effector.
    
 0.995
ALS2
Alsin Rho guanine nucleotide exchange factor ALS2.
    
 0.987
ENSVPAP00000010664
annotation not available
    
 0.987
VPS11
VPS11 core subunit of CORVET and HOPS complexes.
    
 0.983
VPS45
Vacuolar protein sorting 45 homolog.
    
 0.979
ENSVPAP00000011776
annotation not available
   
 0.977
CHM
CHM Rab escort protein.
    
 0.973
OCRL
OCRL inositol polyphosphate-5-phosphatase.
    
 0.967
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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