Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPOXCoproporphyrinogen oxidase. (439 aa)    
Predicted Functional Partners:
ENSVPAP00000010909
annotation not available
  
 0.986
SKIDA1
SKI/DACH domain containing 1.
    
   0.896
FECH
Ferrochelatase.
  
  
 0.866
HMBS
Hydroxymethylbilane synthase.
  
 
 0.854
ENSVPAP00000002723
annotation not available
     
 0.843
CCT6B
Chaperonin containing TCP1 subunit 6B.
   
 
 0.791
CCT6A
Chaperonin containing TCP1 subunit 6A.
   
 
 0.791
AIFM1
Apoptosis inducing factor mitochondria associated 1.
    
   0.791
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
   
  
 0.757
ENSVPAP00000000232
annotation not available
    
 0.753
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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