Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000002684annotation not available (453 aa)    
Predicted Functional Partners:
ENSVPAP00000001728
annotation not available
      
 0.769
TTC39A
Tetratricopeptide repeat domain 39A.
      
 0.615
TRIM33
Tripartite motif containing 33.
    
  0.610
NOX4
NADPH oxidase 4.
      
 0.603
NIPAL2
NIPA like domain containing 2.
      
 0.601
CCDC71
Coiled-coil domain containing 71.
      
 0.594
ENSVPAP00000003396
annotation not available
    
 0.582
MYSM1
Myb like, SWIRM and MPN domains 1.
    
  0.530
TRIM39
Tripartite motif containing 39.
    
  0.499
TRIM24
Tripartite motif containing 24.
    
  0.489
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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