Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SGCZSarcoglycan zeta. (312 aa)    
Predicted Functional Partners:
SSPN
Sarcospan.
   
 0.957
ENSVPAP00000006250
annotation not available
   
 0.947
FAM241A
Family with sequence similarity 241 member A.
    
   0.912
SGCE
Sarcoglycan epsilon.
   
 0.884
ENSVPAP00000008442
annotation not available
   
 0.859
SGCB
Sarcoglycan beta.
    
 0.853
DTNB
Dystrobrevin beta.
    
 0.812
SNTG1
Syntrophin gamma 1.
   
 
 0.777
UTRN
Utrophin.
    
 0.740
DMD
Dystrophin.
    
 0.740
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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