Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C11orf42Chromosome 11 open reading frame 42. (331 aa)    
Predicted Functional Partners:
ZNHIT2
Zinc finger HIT-type containing 2.
      
 0.609
POLDIP3
DNA polymerase delta interacting protein 3.
      
 0.524
TNP1
Transition protein 1.
  
     0.514
SNX5
Sorting nexin 5.
    
 
 0.511
FNDC8
Fibronectin type III domain containing 8.
  
     0.463
CPED1
Cadherin like and PC-esterase domain containing 1.
      
 0.453
LRRC36
Leucine rich repeat containing 36.
  
     0.445
SNX2
Sorting nexin 2.
    
 
 0.445
DEFB123
Defensin beta 123.
  
     0.442
TMCO5A
Transmembrane and coiled-coil domains 5A.
  
     0.432
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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