Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GPANK1G-patch domain and ankyrin repeats 1. (350 aa)    
Predicted Functional Partners:
PRKRIP1
PRKR interacting protein 1.
   
  
 0.656
ENSVPAP00000003018
annotation not available
      
 0.615
SDE2
SDE2 telomere maintenance homolog.
      
 0.605
GOLT1B
Golgi transport 1B.
      
 0.601
LRRC28
Leucine rich repeat containing 28.
      
 0.578
PRRC2C
Proline rich coiled-coil 2C.
      
 0.543
MRPL42
Mitochondrial ribosomal protein L42.
      
 0.540
ENSVPAP00000000023
annotation not available
      
 0.521
ENSVPAP00000006622
annotation not available
   
  
 0.515
UTP4
UTP4 small subunit processome component.
      
 0.512
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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