Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF133Ring finger protein 133. (377 aa)    
Predicted Functional Partners:
ENSVPAP00000000980
annotation not available
      
 0.920
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
    
 
 0.880
USP8
Ubiquitin specific peptidase 8.
    
 0.803
BTNL2
Butyrophilin like 2.
      
 0.726
PRPH2
Peripherin 2.
    
 
 0.696
TBK1
TANK binding kinase 1.
    
 
 0.695
ENSVPAP00000005243
annotation not available
      
 0.691
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.689
PPP1CB
Protein phosphatase 1 catalytic subunit beta.
      
 0.686
PNPLA8
Patatin like phospholipase domain containing 8.
      
 0.677
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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