Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FCF1FCF1 rRNA-processing protein. (198 aa)    
Predicted Functional Partners:
UTP11
UTP11 small subunit processome component.
   
 0.999
ENSVPAP00000002896
annotation not available
   
 0.998
KRR1
KRR1 small subunit processome component homolog.
   
 0.998
UTP20
UTP20 small subunit processome component.
   
 0.997
DCAF13
DDB1 and CUL4 associated factor 13.
   
 0.996
PDCD11
Programmed cell death 11.
   
 0.996
DDX52
DExD-box helicase 52.
   
 0.992
RPS6
Ribosomal protein S6.
    
 0.992
DNTTIP2
Deoxynucleotidyltransferase terminal interacting protein 2.
   
 
 0.989
RCL1
RNA terminal phosphate cyclase like 1.
   
 0.987
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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