Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TPM1Tropomyosin 1. (204 aa)    
Predicted Functional Partners:
TNNT1
Troponin T1, slow skeletal type.
   
 0.955
MYL1
Myosin light chain 1.
   
 0.898
ENSVPAP00000010710
annotation not available
   
 0.883
TMOD1
Tropomodulin 1.
   
 0.862
KXD1
KxDL motif containing 1.
    
   0.832
ENSVPAP00000004982
annotation not available
   
 0.819
MYL2
Myosin light chain 2.
   
 0.794
MYL6
Myosin light chain 6.
   
 0.773
TMOD2
Tropomodulin 2.
   
 0.766
ENSVPAP00000008763
annotation not available
   
 0.766
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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