Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000003048annotation not available (263 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
    
 0.701
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.552
ENSVPAP00000010039
annotation not available
    
 0.519
LIN54
Lin-54 DREAM MuvB core complex component.
    
 0.519
LIN9
Lin-9 DREAM MuvB core complex component.
    
 0.519
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.502
ENSVPAP00000011053
annotation not available
    
 0.502
SASS6
SAS-6 centriolar assembly protein.
    
 0.492
STN1
STN1 subunit of CST complex.
    
 0.492
RPA4
Replication protein A4.
    
 0.492
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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