STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATL2Atlastin GTPase 2. (542 aa)    
Predicted Functional Partners:
FMR1
FMRP translational regulator 1.
    
   0.924
ARL6IP1
ADP ribosylation factor like GTPase 6 interacting protein 1.
    
 
 0.819
ATL3
Atlastin GTPase 3.
    
   0.812
RTN1
Reticulon 1.
    
 
 0.811
RTN3
Reticulon 3.
    
 
 0.802
REEP1
Receptor accessory protein 1.
    
 
 0.757
SPAST
Spastin.
    
 
 0.693
CCDC146
Coiled-coil domain containing 146.
      
 0.680
KATNA1
Katanin catalytic subunit A1.
    
 
 0.644
REEP3
Receptor accessory protein 3.
    
 
 0.638
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.