Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMAAMetabolism of cobalamin associated A. (323 aa)    
Predicted Functional Partners:
MMUT
methylmalonyl-CoA mutase.
  
 
 0.999
MMADHC
Metabolism of cobalamin associated D.
      
 0.923
LMBRD1
LMBR1 domain containing 1.
      
 0.899
MCEE
methylmalonyl-CoA epimerase.
  
   
 0.897
ECHDC1
ethylmalonyl-CoA decarboxylase 1.
      
 0.796
MMACHC
Metabolism of cobalamin associated C.
      
 0.769
MTR
5-methyltetrahydrofolate-homocysteine methyltransferase.
   
  
 0.704
SETD3
SET domain containing 3, actin histidine methyltransferase.
    
 0.697
FDX1
Ferredoxin 1.
      
 0.690
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.690
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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