Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (198 aa)    
Predicted Functional Partners:
U2SURP
U2 snRNP associated SURP domain containing.
    
 0.989
SF3B1
Splicing factor 3b subunit 1.
   
 0.987
PHF5A
PHD finger protein 5A.
   
 0.982
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.980
SNRPB2
Small nuclear ribonucleoprotein polypeptide B2.
   
 0.978
SF3B2
Splicing factor 3b subunit 2.
   
 0.978
RBM17
RNA binding motif protein 17.
   
  0.970
SF3A3
Splicing factor 3a subunit 3.
   
 0.969
PRPF3
pre-mRNA processing factor 3.
    
 
 0.969
SF3B5
Splicing factor 3b subunit 5.
    
 0.962
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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