Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTRTransthyretin. (129 aa)    
Predicted Functional Partners:
RBP4
Retinol binding protein 4.
   
 0.999
APP
Amyloid beta precursor protein.
    
 0.911
GC
GC vitamin D binding protein.
   
  
 0.906
CRABP2
Cellular retinoic acid binding protein 2.
   
 
 0.853
APOA2
Apolipoprotein A2.
   
 
 0.820
ENSVPAP00000003591
annotation not available
   
  
 0.788
ENSVPAP00000001221
annotation not available
   
 0.771
ENSVPAP00000010814
annotation not available
      
 0.769
COL3A1
Collagen type III alpha 1 chain.
      
 0.768
SLC30A5
Solute carrier family 30 member 5.
   
  
 0.765
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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