Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDAGuanine deaminase. (449 aa)    
Predicted Functional Partners:
PNP
Purine nucleoside phosphorylase.
  
 
 0.887
ATRIP
ATR interacting protein.
    
   0.876
HAL
Histidine ammonia-lyase.
  
 
 0.871
XDH
Xanthine dehydrogenase.
 
 
 0.855
UPRT
Uracil phosphoribosyltransferase homolog.
  
 
 0.851
UPP2
Uridine phosphorylase 2.
    
 0.830
AOX1
Aldehyde oxidase 1.
  
 
 0.825
ENSVPAP00000003170
annotation not available
      
 0.769
ENSVPAP00000003380
annotation not available
 
  
 0.766
NT5E
5'-nucleotidase ecto.
    
 0.764
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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