Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (401 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.998
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.989
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.983
SRRM1
Serine and arginine repetitive matrix 1.
    
 0.974
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
  
  
0.968
CASC3
CASC3 exon junction complex subunit.
    
 0.964
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.960
ENSVPAP00000004985
annotation not available
   
 0.945
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 
 0.943
TPR
Translocated promoter region, nuclear basket protein.
   
  0.924
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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