STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF19ARing finger protein 19A, RBR E3 ubiquitin protein ligase. (800 aa)    
Predicted Functional Partners:
ENSVPAP00000002996
annotation not available
   
  
 0.812
TUBG1
Tubulin gamma 1.
      
 0.801
RPS27A
Ribosomal protein S27a.
    
 0.763
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.762
ENSVPAP00000009542
annotation not available
   
 0.762
SCEL
Sciellin.
    
 
 0.750
RBBP6
RB binding protein 6, ubiquitin ligase.
     
 0.714
RNF216
Ring finger protein 216.
    
 0.709
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.706
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 0.702
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.