Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RNF19ARing finger protein 19A, RBR E3 ubiquitin protein ligase. (800 aa)    
Predicted Functional Partners:
ENSVPAP00000009542
annotation not available
    
 0.915
SOD1
Superoxide dismutase 1.
    
 
 0.867
VCP
Valosin containing protein.
    
 
 0.830
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.731
RNF7
Ring finger protein 7.
    
 0.714
RPS27A
Ribosomal protein S27a.
    
  0.714
PFN4
Profilin family member 4.
      
 0.661
RNF19B
Ring finger protein 19B.
   
    0.649
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.645
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 0.635
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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