Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PITX2Paired like homeodomain 2. (187 aa)    
Predicted Functional Partners:
RBPMS
RNA binding protein, mRNA processing factor.
    
 
 0.824
POU1F1
POU class 1 homeobox 1.
   
 
 0.742
LEF1
Lymphoid enhancer binding factor 1.
    
 
 0.735
LHX4
LIM homeobox 4.
   
  
 0.730
SNX16
Sorting nexin 16.
      
 0.726
RIPK2
Receptor interacting serine/threonine kinase 2.
      
 0.707
ENSVPAP00000000531
annotation not available
    
 
 0.696
PCNA
Proliferating cell nuclear antigen.
      
 0.686
KCTD12
Potassium channel tetramerization domain containing 12.
      
 0.677
MCM6
Minichromosome maintenance complex component 6.
      
 0.671
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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