Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPDCarboxypeptidase D. (1054 aa)    
Predicted Functional Partners:
CPM
Carboxypeptidase M.
    
   0.874
CPN1
Carboxypeptidase N subunit 1.
    
   0.861
RND3
Rho family GTPase 3.
     
  0.739
CCDC186
Coiled-coil domain containing 186.
      
 0.690
FAM91A1
Family with sequence similarity 91 member A1.
   
  
 0.677
SORT1
Sortilin 1.
     
 0.676
RAG1
Recombination activating 1.
      
 0.672
SLC26A5
Solute carrier family 26 member 5.
      
 0.669
TBC1D8B
TBC1 domain family member 8B.
     
  0.666
GOSR1
Golgi SNAP receptor complex member 1.
      
 0.628
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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