Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM78BFamily with sequence similarity 78 member B. (237 aa)    
Predicted Functional Partners:
NRXN3
Neurexin 3.
    
 0.719
NRXN1
Neurexin 1.
    
 0.719
WDR43
WD repeat domain 43.
   
 0.684
UTP4
UTP4 small subunit processome component.
    
 0.662
WDR75
WD repeat domain 75.
   
  0.654
WIPF1
WAS/WASL interacting protein family member 1.
      
 0.611
PRPF3
pre-mRNA processing factor 3.
      
 0.596
TAGAP
T cell activation RhoGTPase activating protein.
   
  
 0.595
ENSVPAP00000008130
annotation not available
    
  0.582
DLG1
Discs large MAGUK scaffold protein 1.
    
  0.582
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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