STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUDT21Nudix hydrolase 21. (227 aa)    
Predicted Functional Partners:
CPSF6
Cleavage and polyadenylation specific factor 6.
   
 0.999
CPSF7
Cleavage and polyadenylation specific factor 7.
   
 0.998
ENSVPAP00000010773
annotation not available
   
 0.984
ENSVPAP00000001402
annotation not available
    
 0.978
ZC3H6
Zinc finger CCCH-type containing 6.
    
 0.978
YTHDC2
YTH domain containing 2.
   
 0.947
ZC3H8
Zinc finger CCCH-type containing 8.
    
 0.938
PCF11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.933
SRSF3
Serine and arginine rich splicing factor 3.
   
 
 0.926
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 
 0.911
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.