Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD12-oxoglutarate and iron dependent oxygenase domain containing 1. (543 aa)    
Predicted Functional Partners:
ENSVPAP00000008772
annotation not available
  
 0.984
SYCP3
Synaptonemal complex protein 3.
   
 
 0.960
ENSVPAP00000008822
annotation not available
     
 0.873
ENSVPAP00000001180
annotation not available
   
 
 0.802
CAPRIN1
Cell cycle associated protein 1.
      
 0.761
CPOX
Coproporphyrinogen oxidase.
   
  
 0.757
ZNF644
Zinc finger protein 644.
    
 
 0.711
TLR4
Toll like receptor 4.
      
 0.695
ENSVPAP00000003741
annotation not available
  
   0.693
HERPUD2
HERPUD family member 2.
      
 0.692
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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