Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000003456annotation not available (657 aa)    
Predicted Functional Partners:
THOC5
THO complex 5.
   
 0.999
THOC2
THO complex 2.
   
 0.999
THOC7
THO complex 7.
   
 0.999
CHTOP
Chromatin target of PRMT1.
    
 0.994
SARNP
SAP domain containing ribonucleoprotein.
    
 0.992
ENSVPAP00000008533
annotation not available
   
 0.990
ENSVPAP00000009390
annotation not available
   
 0.972
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.970
POLDIP3
DNA polymerase delta interacting protein 3.
    
 0.969
ZC3H13
Zinc finger CCCH-type containing 13.
   
 0.954
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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