Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC58Leucine rich repeat containing 58. (390 aa)    
Predicted Functional Partners:
ELOC
Elongin C.
    
  0.871
CUL5
Cullin 5.
    
  0.841
CDO1
Cysteine dioxygenase type 1.
    
   0.832
ENSVPAP00000006199
annotation not available
    
 0.770
RPS27A
Ribosomal protein S27a.
    
  0.703
SUCO
SUN domain containing ossification factor.
   
  
 0.701
NEDD8
NEDD8 ubiquitin like modifier.
    
  0.699
RNF7
Ring finger protein 7.
    
  0.698
ENSVPAP00000005471
annotation not available
      
 0.687
KLHL15
Kelch like family member 15.
    
 
 0.657
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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